Index

_

__getitem__() (pyjess.Molecule method) (pyjess.Template method) __init__() (pyjess.Atom method) (pyjess.Jess method) (pyjess.Molecule method) (pyjess.Template method) (pyjess.TemplateAtom method)

__iter__() (pyjess.Query method) __len__() (pyjess.Molecule method) (pyjess.Template method) __new__() (pyjess.Hit method) __reduce__() (pyjess.Hit method)

A

altloc (pyjess.Atom attribute) Atom (class in pyjess)

atom_names (pyjess.TemplateAtom attribute) atoms() (pyjess.Hit method)

C

chain_id (pyjess.Atom attribute) (pyjess.TemplateAtom attribute)

charge (pyjess.Atom attribute)

D

determinant (pyjess.Hit attribute)

dimension (pyjess.Template attribute) distance_weight (pyjess.TemplateAtom attribute)

E

element (pyjess.Atom attribute)

evalue (pyjess.Hit attribute)

H

Hit (class in pyjess)

I

ignore_chain (pyjess.Query attribute)

insertion_code (pyjess.Atom attribute)

J

Jess (class in pyjess)

jess (pyjess.Query attribute)

L

load() (pyjess.Atom class method) (pyjess.TemplateAtom class method)

loads() (pyjess.Atom class method) (pyjess.TemplateAtom class method) log_evalue (pyjess.Hit attribute)

M

match_mode (pyjess.TemplateAtom attribute) max_candidates (pyjess.Query attribute) module pyjess

Molecule (class in pyjess) molecule (pyjess.Hit attribute) (pyjess.Query attribute)

N

name (pyjess.Atom attribute)

O

occupancy (pyjess.Atom attribute)

P

pyjess module

Q

Query (class in pyjess)

query() (pyjess.Jess method)

R

residue_name (pyjess.Atom attribute) residue_names (pyjess.TemplateAtom attribute) residue_number (pyjess.Atom attribute) (pyjess.TemplateAtom attribute)

rmsd (pyjess.Hit attribute) rmsd_threshold (pyjess.Query attribute)

S

segment (pyjess.Atom attribute)

serial (pyjess.Atom attribute)

T

temperature_factor (pyjess.Atom attribute) Template (class in pyjess)

template (pyjess.Hit attribute) TemplateAtom (class in pyjess)

X

x (pyjess.TemplateAtom attribute)

Y

y (pyjess.TemplateAtom attribute)

Z

z (pyjess.TemplateAtom attribute)